PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093751.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 861aa    MW: 94803.7 Da    PI: 6.8303
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093751.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-06455476426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + Cr++++ G C+ Gd+CkF+H+
  XP_011093751.1 455 AYCRHYLQ-GRCHEGDKCKFSHD 476
                     57******.*************7 PP

2zf-CCCH21.54e-07510530525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+++a +G+C++G+ C F+H
  XP_011093751.1 510 PCNNYASNGFCSRGSDCLFSH 530
                     7******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.014451478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6451476IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4452477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4456476IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.38480504IPR000571Zinc finger, CCCH-type
SMARTSM003560.048480506IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685505533IPR000571Zinc finger, CCCH-type
SMARTSM003560.055508532IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5509533IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5510530IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4510531IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MDDSSQLQTL TRNPSEATFS FPPHRRRPLR SRTYCTLIEI LSHCRTNFHQ HQTQVDTGDV  60
ESRRVSEENR SIACQEVNPI DVLVLIPSSE ESKDPLAQGA SVGKNKEHVG FKDGGFDGKQ  120
EALPDLDHTR LITDCVQEVI PENRNNMGDF VVVENQTSDS AIWTTEDQDN GNSFRDIVTL  180
EQLEVDQDFS IQDFSEVLDG CFGMDMAIES SKVGEDHQEN VTMEENISKE AEHDLKLKEM  240
ELENLIYNSG VVESPCHIND DAEIEEGEIS GEAGIADASL DALSENAVSL GERTTEMVHG  300
SKDSFDKEEF ICNYGDRKRG RHEMSDPLLV NLVSSDSNCR EVESRTSAGK MQDCHSQSVF  360
NDNNMKTQRS GSVTPSENPT PCGRNVEENA AENRTSAATE KDGSASKKKR KHGPLTKERR  420
AKKKKKERIK RAEKNRKLGV KRLKLQPVLK PKTKAYCRHY LQGRCHEGDK CKFSHDTVPL  480
TKSKPCGHFA RHSCMKGDDC PFDHQLSKYP CNNYASNGFC SRGSDCLFSH EIPAKQSFSM  540
APNVSKSELT SAHHIVPDKG GSVAISKMTK PEVKFPSPLN NSNSSKHTDT SGQKIDAKFC  600
SVEDSSGKSA ELLAPKPVPR PAGQAPKGVS FLLNGGMRLG DTSKHKQDGS CVKRSDGVDA  660
ASNTILKVPG SFNKTNEIFE GLAPRKPRGI NFLSFAQPRA DDSSSKALPD FIANRKNETG  720
KSVIDDMVKD KLTWSLPASV RTLKVNQQMN QNANSLARGL PEEINGTPLG VHFDTAFSLV  780
KEGPSTPSMI QDSTKKRFLS FGGSWDRSTG GENVDLFSPF KTSLLANSPS SVQKAVQSTL  840
AFAAKFDPDV KIGSSLHQQG R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408425KRKHGPLTKERRAKKKKK
2418426RRAKKKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093751.10.0PREDICTED: uncharacterized protein LOC105173629
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720